
Page 2 FTB 3539 2003
Penalties and Interest
• If the corporation or exempt organization fails to pay its
total tax by the original due date, a late payment penalty
plus interest will be added to the tax due.
• If the corporation or exempt organization does not file its
CA tax return by the extended due date, or the
corporation’s powers, rights, and privileges have been
suspended or forfeited by the FTB or the California SOS,
as of the original due date, the automatic extension will
not apply and a delinquency penalty plus interest will be
assessed from the original due date of the CA tax return.
• If the corporation or exempt organization is required to
remit all of its payments through EFT and pays by
another method, a 10% non-compliance penalty will be
assessed.
Combined Reports
• If members of a combined unitary group have made or
intend to make an election to file a combined unitary
group single return, only the key corporation designated
to file the return should submit form FTB 3539. The key
corporation must include payment of at least the
minimum franchise tax for each corporation of the
combined unitary group that is subject to the franchise
tax in California.
• If members of a combined unitary group intend to file
separate returns with the FTB, each member must
submit its own form FTB 3539 if there is an amount
entered on line 3 of the Tax Payment Worksheet.
• If any member of a combined unitary group meets the
requirements for mandatory EFT, all members must remit
their payments through EFT, regardless of their filing
election.
How to Complete the Tax Payment Worksheet
Line 1 – Enter the total tentative tax, including the alterna-
tive minimum tax, if applicable, for the taxable year.
• If filing Form 100, Form 100W, or Form 100S, and subject
to franchise tax, the tentative tax may not be less than the
minimum franchise tax and Qualified Subchapter S
Subsidiary (QSub) annual tax (S corporations only).
• If filing Form 100, Form 100W, or Form 100S, and
subject to income tax, enter the amount of tax. Corpora-
tions subject to the income tax do not pay the minimum
franchise tax.
• If a corporation incorporates or qualifies to do business
in California on or after January 1, 2000, the corporation
will compute its tax liability for the first taxable year by
multiplying its state net income by the appropriate tax
rate and will not be subject to the minimum franchise
tax. The corporation will become subject to minimum
franchise tax beginning in its second taxable year.
• If filing Form 109, enter the amount of tax. Form 109
filers are not subject to the minimum franchise tax.
Exempt Organizations
• Form 100 filers:
The due dates for corporations also apply to the filing of
Form 100, California Corporation Franchise or Income
Tax Return, by political action committees and exempt
homeowners’ associations.
Political action committees and exempt homeowners’
associations that file Form 100 should not enter the
minimum franchise tax on line 1 of the Tax Payment
Worksheet.
• Form 199 Filers:
Generally, Form 199, California Exempt Organization
Annual Information Return, requires a $10 filing fee to be
paid with the return on the original or extended due date.
Use form FTB 3539 only if paying the fee early. Enter the
amount of the fee on line 3 of the Tax Payment
Worksheet.
• Form 109 Filers:
The due dates for filing Form 109, California Exempt
Organization Business Income Return, depend on the
type of organization filing the return. Employees’ pension
trusts and IRAs (including education IRAs) must file on
or before the 15th day of the 4th month after the close of
their taxable year. All other exempt organizations (except
homeowners’ associations and political organizations)
must file on or before the 15th day of the 5th month after
the close of their taxable year.
TAX PAYMENT WORKSHEET FOR YOUR RECORDS
1 Total tentative tax. Include alternative minimum tax if applicable. See instructions . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
2 Estimated tax payments including prior year overpayment applied as a credit . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 2
3 Tax Due. If line 2 is more than line 1, see instructions. If line 1 is more than line 2, subtract line 2 from line 1.
Enter the result here and on form FTB 3539 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3
Line 2 – Enter the estimated tax payments, including prior
year overpayment applied as a credit. S corporations include
any QSub annual tax payments.
Line 3
Tax due. If the amount on line 1 is more than the amount on
line 2, then the corporation’s or exempt organization’s
tentative tax is more than its payments and credits. The
corporation or exempt organization has tax due.
Subtract line 2 from line 1. Enter this amount on line 3 and
on form FTB 3539.
If the amount on line 2 is more than the amount on line 1,
the payments and credits are more than the tentative tax.
The corporation or exempt organization has no tax due. DO
NOT SEND THE PAYMENT VOUCHER. The corporation or
exempt organization will automatically qualify for an
extension if the California tax return is filed by the extended
due date and the corporation and or exempt organization is
in good standing with the FTB and SOS.